Arx, the new standard in microbial genomics.
Arx represents a breakthrough in scientific data management. Our platform bridges complex computational challenges with intuitive research tools. Self-hosted microbial genomics platform designed for researchers who need powerful, secure and flexible data analysis.
Arx, the new standard in microbial genomics.
Arx represents a breakthrough in scientific data management. Our platform bridges complex computational challenges with intuitive research tools. Self-hosted microbial genomics platform designed for researchers who need powerful, secure and flexible data analysis.
85%
Data analysis acceleration.
80%
Cost reduction.
95%
User satisfaction.
7:1
Research efficiency.
Arx streamlines every step of your microbial genomics workflow — uniting data, analysis, and insights in one intuitive platform so you can work faster, independently, and with confidence.
What we are promising.
PEACE OF MIND.
Store, organize, and protect all your genomic data and meta-data – giving you confidence and easy access at any time.
ACCESSIBILITY.
Arx lets anyone search and analyze data – quickly, easily, and without coding. Boost team efficieny and innovation.
ALL-IN-ONE.
Run and manage all your microbial genomics workflows in one browser platform – no more scattered tools or manual steps.
Discover the interactive microbial genomics analysis tools.
Accelerate your scientific discoveries with intuitive Arx tools and interfaces that transform complex microbial data into actionable insights.
Pathway analysis.
Color biochemical pathway maps by coverage to explore functions across genomes, and compare single genomes or groups with ease. Reveal pathway differences, gaps, and coverage through interactive KEGG map visualizations. Drill down from pathway shapes to detailed annotations and genes for deeper insights.
Annotation search.
See which genomes contain which annotations and jump directly to the corresponding genes. Explore genome-wide annotation coverage with an interactive matrix and search for specific annotations or genomes. Click through for gene-level details and download all results and supporting tables.
Flower plot.
Summarize shared (core) and unique annotations across multiple genomes using an interactive flower plot. Select query and reference genomes, explore color-coded alignments, and zoom or click on features to reveal detailed information. Export publication-ready visualizations with ease.
Compare genes.
Align genes and compare their genomic neighborhoods with dynamic locus views that load ±10 kb around each query and color genes by orthogroup. Search for genes, export FASTA alignments, and interactively zoom, pan, or click on color-coded gene plots. Customize alignment methods and sequence parameters for deeper comparative insights.
Gene trait matching.
Find genes or functional annotations that distinguish two phenotype groups. Match genetic markers to biological or phenotypic traits and uncover new genotype-phenotype correlations. Explore interactive gene plots, then filter, sort, and export the resulting candidate lists.
BLAST.
Run nucleotide or protein BLAST against selected genomes and explore hits within their annotated genomic context. Search for homologous sequences across your database with fast, accurate results for gene or protein queries. Review alignment details alongside relevant metadata for deeper interpretation.
Phylogenetic trees.
Generate phylogenetic trees from TaxID, genome similarity metrics (approxANI/GenDisCal), or single-copy orthologs via OrthoFinder. Compare genomes to reveal evolutionary relationships and explore tree structures interactively. Export clean, publication-ready tree graphics with ease.
Dot plot.
Visualize shared (core) and unique annotations across multiple genomes with an interactive flower plot. Select query and reference genomes, explore color-coded forward, reverse, and repetitive alignments, and zoom or click on gene features for detailed insights. Export publication-ready visualizations with ease.
Award-winning innovation in genomics.
OpenGenomeBrowser, now rebranded as Arx, has been honored with the Innovative Recources Award by the Swiss Institute of Bioinformatics, recognizing our commitment to advancing microbial research research technologies in 2023.
Let's discuss your genomic data analysis needs.
Are you interested? Connect with our genomics experts for personalized solutions.
How it works.
Streamline processes and drive efficient innovation in your analysis.
1
Test Arx for free.
Try Arx for free, and be pleasently surprised by how effortless and comfortable data management can be.
2
Scale.
Acquire a commercial license and access additional services, including data migration, maintenance, support, training, consulting, and custom feature development.
3
Own your data.
Unleash the full power of Arx and reveal in the results of high-speed performance, seamless operation, and access to a wealth of insights.
Tailored end-to-end microbial genomic services.
We guide you through every stage of your microbial genomics journey, offering a comprehensive range of services tailored to your needs. Each service is designed to enhance your experience and drive success in microbial genomics.
SET UP CONSULTING.
Streamline your reasearch workflow with expert Arx platform configuration and strategic implementation.
DATA MIGRATION.
Arx platform configuration and strategic implementation. Ensure secure and efficient transfer of genomic datasets with minimal research workflow disruption.
TAILORED TRAINING.
Empower your team with specialized workshops designed to maximize Arx platform capabilities.
GENOME PROCESSING.
Transform raw genomic data into precise, actionable insights with advanced computational techniques.
ADVANCED CONSULTING.
Navigate complex genomic challenges with personalized strategic guidance from leading bioinformatic experts.
MAINTENANCE & SUPPORT.
Receive continous technical assistance and platform optimization to keep your research running smoothly.
« I'm a biologist, I love working in the lab but I'm not so much into bioinformatics. Now that my genomes are sequenced and loaded into Arx, I can do almost everything I needed just by clicking myself through website! »
« Arx stands out for the range of tools available for genome analysis and for their ease of use. It requires no prior scripting skills and is very user-friendly. I use it several times a week, to search for genomes with particular characteristics or to compare strains from our collection. Compared with conventional bioinformatics tools, it saves a lot of time. »
« Genomics data storage and sharing can be a challenging and time-consuming task. While it doesn’t fall squarely into the realms of research, it remains a critical aspect of our work. Fortunately, Arx can alleviate some of that burden. »
« Without Arx, the data is just stored somewhere and only really accessible by my bioinformatician because he can code. Thanks to Arx, I can just work with the genes that interest me, compare different variants and so on. Without it, it was just not possible, I would have had to learn everything. »
« The scientific collaboration with my customers has sped up significantly thanks to Arx. Before using Arx, we were often losing time with relatively trivial analyses. Thanks to Arx, my customers can do much by themselves! »
« Once or twice, I was just sitting in a train and suddenly had a question about my research. Using my phone, I quickly accessed Arx and my question was answered! »
« Arx offers the tools that I need: compare genes, proteins and genomes. It's very straightforward. »
Transforming microbial genomics
through unique Arx traits.
PRECISE.
Accelerate discovery with proven algorithms that simplify comlpex microbial genomics and deliver reliable results.
INTELLIGENT.
Integrate diverse data sources and turn raw genomics into actionable, meaningful insights.
COLLABORATIVE.
Enable seamless teamwork and knowledge sharing through modern reasearch environments.
SPEED OPTIMIZED.
Process and analyze data at high speed, driving faster scientific progress.
BUDGET-SAVING.
Cut costs and boost efficiency – one integrated solution instead of expensive custom tools.
SCALABLE.
Rely on flexible infrastructure that adapts as your datasets and research grow.
Frequently asked questions.
Discover answers to frequent questions about Arx and our genomic solutions.
Arx is for microbial genomics researchers and biologists who sequence, study, and compare microbial genomes. Arx simplifies complex comparative genomics workflows, allowing users to go from raw data to insights in minutes instead of hours.
Arx allows you to perform gene-level comparative analysis, visualize genomic neighborhoods, conduct phylogenetic analysis, and compare protein sequences and functions across your custom genome collections.
No. Arx is made for comparative genomics on the gene level. It is not optimized for SNP-based analysis and related epidemiological workflows like outbreak tracking.
Your administrator can easily import data using our command-line tools or the secure web-based file upload feature. Arx accepts common formats including FASTA and GenBank.
Arx is a web application. Users securely log in and work with their data and visualizations directly via a standard web browser — no local software or coding is required.
Yes, we offer secure Abrinca Cloud Hosting as an alternative to self-hosting. This is a hassle-free option where we manage all the infrastructure, updates, and maintenance for you.
Yes. All key analysis results and visualizations can be exported for reports and presentations, typically in formats like CSV, FASTA, and high-resolution images (PNG/SVG).